RNA-Seq of water - SRA

SRX18916240: RNA-Seq of water
1 ILLUMINA (NextSeq 500) run: 6.1M spots, 932.1M bases, 350.2Mb downloads

Design: Random amplification of nucleic acids was carried out using SuperScript III reverse transcriptase (Invitrogen, USA) and primer-A (5'-GTTTCCCAGTAGGTCTCNNNNNNNNN-3'). Double stranded DNA was generated by two rounds of synthesis with Sequenase 2.0 (USB, USA), followed by amplification with Phusion DNA polymerase using primer-B (5'-GTTTCCCAGTAGGTCTC-3')

Submitted by: ECOSUR

Study: fresh and wastewater Raw sequence reads

PRJNA886712 • SRP415605 • All experiments • All runs

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Determine the diversity of phytopathogenic viruses in fresh and wastewater water samples by massive sequencing tools as possible threats to agriculture.

Sample: Control water

SAMN31759350 • SRS16342977 • All experiments • All runs

Organism: Pepper mild mottle virus

Library:

Name: Control

Instrument: NextSeq 500

Strategy: RNA-Seq

Source: METAGENOMIC

Selection: cDNA

Layout: PAIRED

Runs: 1 run, 6.1M spots, 932.1M bases, 350.2Mb

Run	# of Spots	# of Bases	Size	Published
SRR22959540	6,132,105	932.1M	350.2Mb	2023-01-03

ID:: 26027039

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Sequence Read Archive

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